miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum



ABOUT THIS RECORD

ID: MNEST002550
species: Saccharum officinarum
miRNA family: MIR408
source: miRNEST

Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGCACTGCCTCTTCCCTGGCT

miRNA*
ACAGGGATGAGGCAGAGCATG

mismatches: 3
bulges: 0

View larger
pre-miRNA
TATGGTTGGAGACAGGGATGAGGCAGAGCATGGGATGAGGCCATCAACAAAATTTCCAATTTCTGTCCTCCGCTAGGCCGCTACTGCATTTCTGTTTGCT
TGCTCACAAAACGGAGGGATTTGTGAGAGTTATCAGGCAGAAAGAACAAAGAAGGTGCCTCCCTGGTGAAGTGGTGATGGCCTGACCTGAGACGGCTGAG
AGCTCAGCTGGTGTCCTGTTGTTGCTTCCTCCCCTGCACTGCCTCTTCCCTGGCTCCCCACCG


dot-bracket secondary structure
...(((.((((.((((((.(((((((.(((.((((.(((((...(((((..((..((..((((.(((.......((((((.((((((.((((((((((..
..((((((((.........))))))))......))))))))))..((.......))(((.....)))...)))))).)))))))))..)))).((((((.
...)))))))).))..)))))..))))).)))).))).))))))).)))))).))))..))).



SIMILARITIES
miRBase sof-MIR408a: 8e-149

PMRD sof-miR408a: 8e-149

microPC miR408: 0.0002
UniProt no hits

RFAM MIR408: 0.00000000000007
most similar mature miRNAs

Identical with: sof-MIR408a from miRBase (MNEST042462)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record





Liczniki na strone;